Automate your analysis from
data to visualization and a report

The Galaxy Workflows Library is a curated collection of ready-to-use, open-source analysis workflows designed to help researchers make progress quickly and reliably. Each workflow comes with sample datasets, clear documentation, and links to training materials to streamline learning and application.

Whether you're working on a public Galaxy server, your own private Galaxy instance, these workflows are here to empower your research with robust, reproducible, and accessible tools.

Browse the library »

Why use peer-reviewed Galaxy workflows?

Adherence to best practices

Every workflow is developed following community-established standards, ensuring consistency and reliability.

Compatibility and portability

Workflows are ready to run on usegalaxy.* servers, and they can be adapted for private Galaxy instances.

Open-source Accessibility

All workflows are freely available, fostering transparency and collaboration.

Closely linked to training resources

Each workflow is linked to relevant tutorials from the Galaxy Training Network (GTN), providing hands-on guidance for users.

Reliable and regularly tested

Regular testing ensures workflows remain operational and effective, giving you confidence in their performance.

These are high-quality workflows, ready to run

All workflows undergo a rigorous peer-review process involving subject-matter experts. The review process validates that the workflow is scientifically sound, that it adheres to the best practices in terms of tools, parameters, and Galaxy usage. The review process also ensures the workflow has necessary documentation and annotations as well as links to training materials where applicable.

Join the community

The Galaxy Workflows Library is an open, collaborative project, and we welcome contributions from the community. Whether you want to enhance existing workflows, report issues, or contribute new pipelines, your input is invaluable.

Have questions or feedback? Connect via Galaxy’s Community Hub or engage with other users and contributors through project chats and social media.

Explore the GitHub Repository:

Visit the library GitHub repository for contribution guidelines, issue tracking, and pull request templates.

Improve Existing Workflows:

Help refine current workflows by fixing bugs, adding features, or updating documentation.

Submit New Workflows:

Share your own workflows by following our submission guidelines.

Participate in Peer Review:

Join the review process to help maintain high standards for the library.

Why contribute a workflow?

Ohh, so many reasons!

Get a free DOI and citations that follow
Automatic deployment to usegalaxy.*
Daily testing with easy-to-inspect results
Testing against new releases
Automatic updates and versioning
Bug reports and contributions from users
Performance benchmarks
Static webpage with all the workflow details
Discoverability by your peers